Package it.unibo.alchemist.model.biochemistry.conditions

Class BiomolPresentInEnv

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description

    • Method Summary

      Modifier and Type Method Description
      double getPropensityContribution() Propensity influence is computed through the binomial coefficient.
      BiomolPresentInEnv<P> cloneCondition(Node<Double> node, Reaction<Double> r)
      Context getContext()
      boolean isValid()

      • Methods inherited from class it.unibo.alchemist.model.biochemistry.conditions.GenericMoleculePresent

        getMolecule, getQuantity, toString

      • Methods inherited from class it.unibo.alchemist.model.conditions.AbstractCondition

        cloneCondition, getInboundDependencies, getNode, toString

      • Methods inherited from class it.unibo.alchemist.model.Condition

        getContext, getPropensityContribution, isValid, reactionReady

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • BiomolPresentInEnv

        BiomolPresentInEnv(Environment<Double, P> environment, Node<Double> node, Biomolecule biomolecule, Double concentration)
        Initialize condition for extra-cellular environment, implemented as a set of EnvironmentNode.
        Parameters:
        environment - the Environment where the node is located.
        node - the node where this condition is located;
        biomolecule - the Biomolecule which the condition is about.
        concentration - the requested concentration.