Constructor Detail

• EnvironmentSurrogate

  EnvironmentSurrogate(Environment<T, P> origin, Integer dimensions)

  Parameters:

  dimensions - the number of dimensions of this environment.

Method Detail

• getOrigin

   Environment<T, P> getOrigin()

• getDimensions

   final Integer getDimensions()

• nodes

   final List<NodeSurrogate<T>> nodes()

  The nodes inside this environment.

  Returns:

  the nodes in this environment.

• layers

   final List<LayerSurrogate<T, P>> layers()

  The layers inside this environment.

  Returns:

  the layers in this environment.

• nodeById

   final NodeSurrogate<T> nodeById(Integer id)

  Returns the node with the given id.

  Parameters:

  id - the id of the node

• nodeToPos

   final NodeToPosMap nodeToPos()

  Returns a NodeToPosMap representing all nodes associated with their position.

• getNeighborhood

   final NeighborhoodSurrogate<T> getNeighborhood(Integer nodeId)

  Returns the neighborhood of the node with the given id.

  Parameters:

  nodeId - the id of the node

  Returns:

  the neighborhood of the node with the given id.

• cloneNode

   final NodeSurrogate<T> cloneNode(Integer nodeId, PositionInput position, Double time)

  Clone the node associated with the given id to the specified position.

  Parameters:

  nodeId - the id of the node to clone

  position - the position where to clone the node

  Returns:

  true if the node has been cloned, false otherwise

• getLayer

   final LayerSurrogate<T, P> getLayer(MoleculeInput m)

  Returns the LayerSurrogate associated with the molecule represented by the given MoleculeInput.

  Parameters:

  m - the MoleculeInput object associated to the layer

  Returns:

  the LayerSurrogate associated with the molecule represented by the given MoleculeInput