Constructor Detail

Method Detail

• cloneCondition

   abstract Condition<T> cloneCondition(Node<T> node, Reaction<T> reaction)

  This method allows to clone this action on a new node. It may result useful to support runtime creation of nodes with the same reaction programming, e.g. for morphogenesis.

  Parameters:

  node - The node where to clone this Condition

  reaction - The Reaction where to clone this Condition

  Returns:

  the cloned action

• getContext

   abstract Context getContext()

  Returns:

  The context for this condition.

• getInboundDependencies

   abstract ListSet<out Dependency> getInboundDependencies()

  Returns:

  The list of molecules whose concentration may influence the truth value of this condition

• getNode

   abstract Node<T> getNode()

  Returns:

  the node this Condition belongs to

• getPropensityContribution

   abstract double getPropensityContribution()

  This method is a support for the propensity calculation inside the Reactions. It allows this condition to influence the rate calculation in some way. It's up to the reaction to decide whether to use or not this information, and how.

  Returns:

  how this condition may influence the propensity.

• isValid

   abstract boolean isValid()

  Returns:

  true if the condition is satisfied in current environment.

• reactionReady

   void reactionReady()

  This method is called by the Simulation once the Reaction whose this Condition belongs to is the next one to be executed, and all its conditions passed (namely, the next operation will be the reaction execution). It can be used to perform sanity checks, as well as for registering the status of the simulated world for future comparisons. Defaults to an empty implementation.