Constructor Detail

Method Detail

• getProperty

   abstract double getProperty(Node<T> node, Molecule molecule, String property)

  Given a Node, a Molecule and a property expressed as a String, returns a numeric value. If a numeric value is not deducible, Double.NaN is returned.

  Parameters:

  node - the node

  molecule - the molecule to analyze

  property - the property to extract

  Returns:

  a numeric value representing the property

• createMolecule

   abstract Molecule createMolecule(String s)

  Parses a String, and provides a Molecule.

  Parameters:

  s - the String to parse

  Returns:

  an Molecule created parsing the passed String

• createConcentration

   abstract T createConcentration(@Nullable() Object descriptor)

  Creates a new concentration object of a specific concrete type.

  Parameters:

  descriptor - the String to parse

  Returns:

  a concentration of a certain concrete type

• createConcentration

   abstract T createConcentration()

  Creates a new concentration object of a specific concrete type.

  Returns:

  a concentration of a certain concrete type

• createNode

   abstract Node<T> createNode(RandomGenerator randomGenerator, Environment<T, P> environment, @Nullable() Object parameter)

  Parameters:

  randomGenerator - the random engine

  environment - the environment that will host this object

  parameter - a String describing the object

  Returns:

  a new Node

• createTimeDistribution

   abstract TimeDistribution<T> createTimeDistribution(RandomGenerator randomGenerator, Environment<T, P> environment, @Nullable() Node<T> node, @Nullable() Object parameter)

  Parameters:

  randomGenerator - the random engine

  environment - the environment that will host this object

  node - the node that will host this object.

  parameter - a String describing the object

  Returns:

  a new TimeDistribution

• createReaction

   abstract Reaction<T> createReaction(RandomGenerator randomGenerator, Environment<T, P> environment, Node<T> node, TimeDistribution<T> timeDistribution, @Nullable() Object parameter)

  Parameters:

  randomGenerator - the random engine

  environment - the environment that will host this object

  node - the node that will host this object

  timeDistribution - the time distribution of the reaction

  parameter - a String describing the object

  Returns:

  a new Reaction

• createCondition

   abstract Condition<T> createCondition(RandomGenerator randomGenerator, Environment<T, P> environment, @Nullable() Node<T> node, TimeDistribution<T> time, Actionable<T> actionable, @Nullable() Object additionalParameters)

  Parameters:

  randomGenerator - the random engine

  environment - the environment that will host this object

  node - the node that will host this object.

  time - the time distribution of the reaction

  actionable - the actionable hosting this object

  additionalParameters - a String describing the object

  Returns:

  a new Condition

• createAction

   abstract Action<T> createAction(RandomGenerator randomGenerator, Environment<T, P> environment, @Nullable() Node<T> node, TimeDistribution<T> time, Actionable<T> actionable, @Nullable() Object additionalParameters)

  Parameters:

  randomGenerator - the random engine

  environment - the environment that will host this object

  node - the node that will host this object.

  time - the time distribution of the reaction

  actionable - the actionable hosting this object

  additionalParameters - a String describing the object

  Returns:

  a new Action