Constructor Detail

Method Detail

• getGlobalReactions

   ListSet<GlobalReaction<T>> getGlobalReactions()

• getNodes

   final ListSet<Node<T>> getNodes()

• getIncarnation

  @Nonnull() final Incarnation<T, P> getIncarnation()

• getSimulation

  @Nonnull() final Simulation<T, P> getSimulation()

• setSimulation

   final void setSimulation(Simulation<T, P> simulation)

• addLayer

   final void addLayer(Molecule m, Layer<T, P> l)

• addGlobalReaction

   void addGlobalReaction(GlobalReaction<T> reaction)

• removeGlobalReaction

   void removeGlobalReaction(GlobalReaction<T> reaction)

• addNode

   final boolean addNode(Node<T> node, P p)

• addTerminator

   final void addTerminator(Predicate<Environment<T, P>> terminator)

• forEach

   final void forEach(Consumer<in Node<T>> action)

• getDistanceBetweenNodes

   final double getDistanceBetweenNodes(Node<T> n1, Node<T> n2)

• getLayer

   final Optional<Layer<T, P>> getLayer(Molecule m)

• getLayers

   final ListSet<Layer<T, P>> getLayers()

• getLinkingRule

   final LinkingRule<T, P> getLinkingRule()

• setLinkingRule

   final void setLinkingRule(LinkingRule<T, P> r)

• getNeighborhood

   final Neighborhood<T> getNeighborhood(@Nonnull() Node<T> center)

• getNodeByID

   final Node<T> getNodeByID(int id)

• getNodeCount

   final int getNodeCount()

• getNodesWithinRange

   final ListSet<Node<T>> getNodesWithinRange(Node<T> center, double range)

• getNodesWithinRange

   final ListSet<Node<T>> getNodesWithinRange(P center, double range)

• getPosition

  @Nonnull() final P getPosition(Node<T> node)

• getSizeInDistanceUnits

   Array<double> getSizeInDistanceUnits()

  Override this method if units measuring distance do not match with units used for coordinates. For instance, if your space is non-Euclidean, or if you are using polar coordinates. A notable example is using geographical latitude-longitude as y-x coordinates and meters as distance measure.

• isTerminated

   final boolean isTerminated()

• iterator

  @Nonnull() final Iterator<Node<T>> iterator()

• removeNode

   final void removeNode(@Nonnull() Node<T> node)

• spliterator

   final Spliterator<Node<T>> spliterator()

• toString

   String toString()

  Not used internally. Override as you please.