Package-level declarations

An operation performed when its owning Reaction executes.

Represents a node's capability.

A prerequisite over model state owned by a Reaction.

Interface for an environment. Every environment must implement this specification. T is the concentration type, P is the Position type.

An environment with Obstacles.

An Euclidean space, where Positions P are valid Vectors, supporting any concentration type T.

Represents a specific point on the Earth's surface.

An incarnation: the factory of the model entities of a specific computational model.

A substance or a molecule with a spatial distribution whose values may change over time, associated with an Environment during setup.

A molecule, identified by its name.

A neighborhood, namely the set of nodes to which a "central" node is connected to.

A policy that links the nodes of an environment, observing the state the links depend on (such as positions or contents) and publishing the neighborhood of each node whenever it changes. Network models are bound to the environment whose nodes they link.

A generic obstacle in a vector space.

An interface to represent a generic coordinates system.

A bidimensional position.

A scheduled entity whose absolute occurrence time is owned by the entity itself.

A model entity owning Reaction membership.

A predicate that determines whether a simulation should be terminated. The predicate is evaluated at the end of each simulation step. If the predicate returns true, the simulation gets terminated.

Interface for time representation.

A Reaction whose putative occurrence delays are sampled from a timeDistribution.

Generates non-negative delays between occurrences.