Reference

Information-oriented

Reference

Contents

• YAML simulation specification

  Specification of the YAML-based language simulations are configured with.
• KDoc API (per-module)

  KDoc API docs. Captures both Java and Kotlin API abstractions.
• Project organization

  Locations where things are found: build files, API implementations
• Biochemistry Incarnation

  Reference documentation of the reactions language for the biochemistry incarnation.
• Command Line interface

  Available CLI options.
• Default Graphical User Interface

  Redirect page for the current default graphical interface
• SAPERE Incarnation

  Reference API for the SAPERE Incarnation.
• Swing GUI

  Key mappings for the Java Swing-based graphical interface
• KDoc API

  KDoc API docs. Captures both Java and Kotlin API abstractions.
• Javadoc API

  Javadoc API docs. Kotlin classes are not captured as well as in KDoc, so the KDoc could be a better pick for most tasks.