alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry.reactions/BiochemicalNodeReaction

BiochemicalNodeReaction

class BiochemicalNodeReaction(node: Node<Double>, timeDistribution: TimeDistribution<Double>, environment: Environment<Double, *>, randomGenerator: RandomGenerator) : ChemicalNodeReaction<Double> (source)

A memoryless biochemical reaction with an explicit contract for its supported condition semantics. Every factor is validated even when an earlier factor has already made the total rate zero.

Constructors

constructor(node: Node<Double>, timeDistribution: TimeDistribution<Double>, environment: Environment<Double, *>, randomGenerator: RandomGenerator)

Properties

actions

open override var actions: List<Action<Double>>

canExecute

open override val canExecute: Observable<Boolean>

conditions

open override var conditions: List<Condition<Double>>

finitePositiveMeanDelayOrError

open val finitePositiveMeanDelayOrError: Double

host

override val host: Node<Double>

meanDelay

open override val meanDelay: Double

nextOccurrence

override val nextOccurrence: Observable<Time>

rate

override val rate: Double

timeDistribution

override val timeDistribution: TimeDistribution<Double>

Functions

cloneOnNewNode

open override fun cloneOnNewNode(node: Node<Double>): BiochemicalNodeReaction

compareTo

operator override fun compareTo(other: Reaction<Double>): Int

dispose

open override fun dispose()

execute

open override fun execute()

initializationComplete

override fun initializationComplete(atTime: Time, environment: Environment<Double, *>)

toString

open override fun toString(): String

updateSchedulingAfterFiring

override fun updateSchedulingAfterFiring(currentTime: Time)

updateSchedulingAfterInvalidation

override fun updateSchedulingAfterInvalidation(currentTime: Time)