alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry/EnvironmentSupportingDeformableCells

EnvironmentSupportingDeformableCells

interface EnvironmentSupportingDeformableCells<P : Position<out P>> : Environment<Double, P> (source)

An Environment supporting deformable cells.

Type Parameters

P

position type

Inheritors

Properties

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abstract val dimensions: Int
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abstract val incarnation: Incarnation<Double, P>
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abstract val isTerminated: Boolean
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abstract val layers: Map<Molecule, Layer<Double, P>>
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abstract val maxDiameterAmongCircularDeformableCells: Observable<Double>

The biggest diameter among the unstressed deformable cells, or zero if there are none. It changes as cells are added and removed, which changes the range within which deformable cells interact.

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abstract val nodeCount: Observable<Int>
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abstract val nodes: ObservableList<Node<Double>>
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abstract val offset: DoubleArray
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abstract var simulation: Simulation<Double, P>
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abstract val simulationOrNull: Simulation<Double, P>?
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abstract val size: DoubleArray
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Functions

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abstract fun addLayer(molecule: Molecule, layer: Layer<Double, P>)
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abstract fun addNode(node: Node<Double>, position: P): Boolean
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abstract fun addReaction(reaction: Reaction<Double>)
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abstract fun addTerminator(terminator: TerminationPredicate<Double, P>)
open fun addTerminator(terminator: (Environment<Double, P>) -> Boolean)
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open operator fun contains(node: Node<Double>): Boolean
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open fun currentPositionOf(node: Node<Double>): P
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abstract fun distanceBetween(n1: Node<Double>, n2: Node<Double>): Double
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open fun Node<Double>.distanceTo(other: Node<Double>): Double
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open fun farthestReachablePosition(node: Node<Double>, desired: P): P
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abstract fun layerFor(molecule: Molecule): Layer<Double, P>?
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abstract fun makePosition(coordinates: DoubleArray): P
open fun makePosition(coordinates: List<Number>): P
abstract fun makePosition(vararg coordinates: Number): P
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abstract fun moveNodeTo(node: Node<Double>, position: P)
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open fun Node<Double>.moveTo(position: P)
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abstract fun nodesAround(position: P, range: Double): List<Node<Double>>
abstract fun nodesAround(node: Node<Double>, range: Double): List<Node<Double>>
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open fun P.nodesInRange(range: Double): List<Node<Double>>
open fun Node<Double>.nodesInRange(range: Double): List<Node<Double>>
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abstract fun nodeWithId(id: Int): Node<Double>
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abstract fun observeLayerValue(molecule: Molecule, node: Node<Double>): Observable<Double?>
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abstract fun observeNodesAround(position: P, range: Double): ObservableSet<Node<Double>>
abstract fun observeNodesAround(node: Node<Double>, range: Double): ObservableSet<Node<Double>>
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abstract fun positionOf(node: Node<Double>): Observable<P>
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open fun Node<Double>.remove()
open fun Reaction<Double>.remove()
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abstract fun removeNode(node: Node<Double>)
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abstract fun removeReaction(reaction: Reaction<Double>)
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open fun DoubleArray.toPosition(): P
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(c) Danilo Pianini and contributors listed in the Alchemist build files