MoleculeReader

class MoleculeReader @JvmOverloads constructor(moleculeName: String, property: String?, incarnation: Incarnation<*, *>, filter: ExportFilter, aggregatorNames: List<String>, val precision: Int? = null) : AbstractDoubleExporter

Reads the value of a molecule and logs it.

Parameters

moleculeName
the target molecule
property
the target property
incarnation
the target incarnation
filter
the [FilteringPolicy] to use
aggregatorNames
the names of the [UnivariateStatistic] to use for
aggregating data. If an empty list is passed, then the values
will be logged indipendently for each node.

Constructors

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constructor(moleculeName: String, property: String?, incarnation: Incarnation<*, *>, filter: ExportFilter, aggregatorNames: List<String>, precision: Int? = null)

Properties

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open override val columnNames: List<String>
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val precision: Int? = null

Functions

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open override fun <T> extractData(environment: Environment<T, *>, reaction: Actionable<T>?, time: Time, step: Long): Map<String, Double>

Extracts properties from an environment. The returned map must either:

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override fun <T> extractDataAsText(environment: Environment<T, *>, reaction: Actionable<T>?, time: Time, step: Long): Map<String, String>

Same as extractData, but specifically meant for textual outputs. Captures E to String conversions. The default implementation just runs a toString() conversion ver extractData's return value's values.