alchemist/it.unibo.alchemist.model.biochemistry/EnvironmentSupportingDeformableCells

EnvironmentSupportingDeformableCells

interface EnvironmentSupportingDeformableCells<P : Position<out P>?> : Environment<T, P>

Environment supporting deformable cells.

Parameters

<P>

position type

Inheritors

BioRect2DEnvironmentNoOverlap

Functions

addGlobalReaction

abstract fun addGlobalReaction(p: GlobalReaction<T>)

addLayer

abstract fun addLayer(p: Molecule, p1: Layer<T, P>)

addNode

abstract fun addNode(p: Node<T>, p1: P): Boolean

addTerminator

abstract fun addTerminator(p: Predicate<Environment<T, P>>)

forEach

open fun forEach(action: Consumer<in T>)

getDimensions

abstract fun getDimensions(): Int

getDistanceBetweenNodes

abstract fun getDistanceBetweenNodes(p: Node<T>, p1: Node<T>): Double

getGlobalReactions

abstract fun getGlobalReactions(): ListSet<GlobalReaction<T>>

getIncarnation

abstract fun getIncarnation(): Incarnation<T, P>

getLayer

abstract fun getLayer(p: Molecule): Optional<Layer<T, P>>

getLayers

abstract fun getLayers(): ListSet<Layer<T, P>>

getLinkingRule

abstract fun getLinkingRule(): LinkingRule<T, P>

getMaxDiameterAmongCircularDeformableCells

abstract fun getMaxDiameterAmongCircularDeformableCells(): Double

getNeighborhood

abstract fun getNeighborhood(p: Node<T>): Neighborhood<T>

getNodeByID

abstract fun getNodeByID(p: Int): Node<T>

getNodeCount

abstract fun getNodeCount(): Int

getNodes

abstract fun getNodes(): ListSet<Node<T>>

getNodesWithinRange

abstract fun getNodesWithinRange(p: Node<T>, p1: Double): ListSet<Node<T>>

getOffset

abstract fun getOffset(): Array<Double>

getPosition

abstract fun getPosition(p: Node<T>): P

getSimulation

abstract fun getSimulation(): Simulation<T, P>

getSize

abstract fun getSize(): Array<Double>

getSizeInDistanceUnits

abstract fun getSizeInDistanceUnits(): Array<Double>

isTerminated

abstract fun isTerminated(): Boolean

iterator

abstract fun iterator(): Iterator<T>

makePosition

abstract fun makePosition(p: Array<Number>): P

moveNodeToPosition

abstract fun moveNodeToPosition(p: Node<T>, p1: P)

removeGlobalReaction

abstract fun removeGlobalReaction(p: GlobalReaction<T>)

removeNode

abstract fun removeNode(p: Node<T>)

setLinkingRule

abstract fun setLinkingRule(p: LinkingRule<T, P>)

setSimulation

abstract fun setSimulation(p: Simulation<T, P>)

spliterator

open fun spliterator(): Spliterator<T>

subscriptionMonitor

fun <T, P : Position<out P>> Environment<T, P>.subscriptionMonitor(): EnvironmentSubscriptionMonitor<T, P>

Returns the EnvironmentSubscriptionMonitor of this Environment.

toGraphQLEnvironmentSurrogate

fun <T, P : Position<out P>> Environment<T, P>.toGraphQLEnvironmentSurrogate(): EnvironmentSurrogate<T, P>

Converts an Environment to a EnvironmentSurrogate.