alchemist/it.unibo.alchemist.model.implementations.nodes/CircularDeformableCellImpl

CircularDeformableCellImpl

class CircularDeformableCellImpl?, Vector?> : CellNodeImpl , CircularDeformableCell

Implementation of a circular deformable cell.

Parameters

Position type

Constructors

CircularDeformableCellImpl

open fun CircularDeformableCellImpl(env: Environment<Double, P>, maxDiameter: Double, rigidity: Double)

Create a circular deformable cell of maxDiam = maxDiameter and minDiam = deformability * maxDiam.

Functions

addJunction

fun addJunction(j: Junction, neighbor: CellNode<out Any>)

abstract fun addJunction(j: Junction, neighbor: CellNode<out Any>)

Add a junction to the current node.

addPolarization

fun addPolarization(v: P)

abstract fun addPolarization(v: P)

add v to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

addReaction

fun addReaction(reactionToAdd: Reaction<T>)

cloneNode

open fun cloneNode(currentTime: Time): AbstractNode<T>

abstract fun cloneNode(p: Time): Node<T>

compareTo

fun compareTo(other: Node<T>): Int

contains

open fun contains(molecule: Molecule): Boolean

fun contains(m: Molecule): Boolean

containsJunction

fun containsJunction(j: Junction): Boolean

abstract fun containsJunction(j: Junction): Boolean

Return true if a junction is present in the current node, false otherwise.

equals

fun equals(other: Any): Boolean

forEach

fun forEach(action: Consumer<out Any>)

getAllNodesLinkWithJunction

fun getAllNodesLinkWithJunction(): Set<CellNode<out Any>>

getConcentration

open fun getConcentration(molecule: Molecule): T

getContents

open fun getContents(): Map<Molecule, T>

getDiameter

fun getDiameter(): Double

getId

fun getId(): Int

getJunctions

fun getJunctions(): Map<Junction, Map<CellNode<out Any>, Integer>>

getJunctionsCount

fun getJunctionsCount(): Int

getMaxDiameter

open fun getMaxDiameter(): Double

getMaxRadius

open fun getMaxRadius(): Double

getMoleculeCount

open fun getMoleculeCount(): Int

getNeighborsLinkWithJunction

fun getNeighborsLinkWithJunction(j: Junction): Set<CellNode<out Any>>

abstract fun getNeighborsLinkWithJunction(j: Junction): Set<CellNode<out Any>>

Returns a set of ICellNode which are linked with the current node by a junction of the type j.

getPolarizationVersor

fun getPolarizationVersor(): P

getRadius

fun getRadius(): Double

getReactions

fun getReactions(): List<Reaction<T>>

hashCode

fun hashCode(): Int

iterator

fun iterator(): Iterator<Reaction<T>>

abstract fun iterator(): Iterator<T>

removeConcentration

open fun removeConcentration(moleculeToRemove: Molecule)

removeJunction

fun removeJunction(j: Junction, neighbor: CellNode<out Any>)

abstract fun removeJunction(j: Junction, neighbor: CellNode<out Any>)

Remove a junction from this node.

removeReaction

fun removeReaction(reactionToRemove: Reaction<T>)

setConcentration

open fun setConcentration(molecule: Molecule, concentration: T)

fun setConcentration(mol: Molecule, c: Double)

setPolarization

fun setPolarization(v: P)

abstract fun setPolarization(v: P)

set the polarization versor, e.g.

spliterator

fun spliterator(): Spliterator<Reaction<T>>

open fun spliterator(): Spliterator<T>

toString

open fun toString(): String