alchemist/it.unibo.alchemist.model.implementations.reactions/BiochemicalReaction

BiochemicalReaction

class BiochemicalReaction : ChemicalReaction<Double>

A biochemical Reaction.

Constructors

open fun BiochemicalReaction(node: Node<Double>, timeDistribution: TimeDistribution<Double>, environment: Environment<Double, out Any>, randomGenerator: RandomGenerator)

Functions

canExecute

open fun canExecute(): Boolean

cloneOnNewNode

open fun cloneOnNewNode(node: Node<Double>, currentTime: Time): BiochemicalReaction

abstract fun cloneOnNewNode(p: Node<T>, p1: Time): Reaction<T>

compareTo

fun compareTo(o: Reaction<T>): Int

equals

fun equals(o: Any): Boolean

execute

open fun execute()

getActions

open fun getActions(): List<Action<T>>

getConditions

open fun getConditions(): List<Condition<T>>

getInboundDependencies

fun getInboundDependencies(): ListSet<Dependency>

abstract fun getInboundDependencies(): ListSet<out Dependency>

getInputContext

fun getInputContext(): Context

getNode

fun getNode(): Node<T>

getOutboundDependencies

fun getOutboundDependencies(): ListSet<Dependency>

abstract fun getOutboundDependencies(): ListSet<out Dependency>

getOutputContext

fun getOutputContext(): Context

getRate

fun getRate(): Double

getTau

fun getTau(): Time

getTimeDistribution

fun getTimeDistribution(): TimeDistribution<T>

hashCode

fun hashCode(): Int

initializationComplete

fun initializationComplete(atTime: Time, environment: Environment<T, out Any>)

setActions

open fun setActions(actions: List<Action<T>>)

setConditions

open fun setConditions(conditions: List<Condition<Double>>)

toString

open fun toString(): String

update

fun update(currentTime: Time, hasBeenExecuted: Boolean, environment: Environment<T, out Any>)