alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry.conditions/BiomolPresentInEnv

BiomolPresentInEnv

class BiomolPresentInEnv<P : Position<out P>?> : GenericMoleculePresent<T> (source)

Parameters

<P>

Position type

Constructors

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constructor(environment: Environment<Double, P>, node: Node<Double>, biomolecule: Biomolecule, concentration: Double)
Initialize condition for extracellular environment, implemented as a set of EnvironmentNode.

Properties

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val node: Node<T>

Functions

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open fun cloneCondition(newNode: Node<Double>, newReaction: Reaction<Double>): BiomolPresentInEnv<P>
open fun cloneCondition(p: Node<T>, p1: Reaction<T>): Condition<T>
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abstract fun getContext(): Context
open fun getContext(): Context
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fun getInboundDependencies(): ListSet<out Dependency>
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abstract fun getPropensityContribution(): Double

open fun getPropensityContribution(): Double
Propensity influence is computed through the binomial coefficient.
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open fun getQuantity(): T
Allows accessing the threshold.
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abstract fun isValid(): Boolean
open fun isValid(): Boolean
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open fun reactionReady()
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open fun toString(): String
open fun toString(): String