39.0.0

alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry.conditions/BiomolPresentInNeighbor

BiomolPresentInNeighbor

class BiomolPresentInNeighbor : AbstractNeighborCondition<T> (source)

This condition is valid if a selected biomolecule is present in the neighborhood of the node.

Constructors

BiomolPresentInNeighbor

constructor(environment: Environment<Double, out Any>, node: Node<Double>, molecule: Biomolecule, concentration: Double)

Properties

val node: Node<T>

Functions

open fun cloneCondition(node: Node<Double>, reaction: Reaction<Double>): BiomolPresentInNeighbor

open fun cloneCondition(p: Node<T>, p1: Reaction<T>): Condition<T>

abstract fun getContext(): Context

fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

abstract fun getPropensityContribution(): Double

open fun getPropensityContribution(): Double

Override if the desired behavior differs.

getValidNeighbors

fun getValidNeighbors(): Map<Node<T>, Double>

Searches in the given neighborhood which nodes satisfy the condition and returns a list of valid neighbors.

open fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String