39.0.0

alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry.conditions/AbstractNeighborCondition

AbstractNeighborCondition

abstract class AbstractNeighborCondition<T> : AbstractCondition<T> (source)

Represents a condition on a neighbor. Formally, this condition is satisfied if at least one neighbor satisfies the condition.

Parameters

<T>

the concentration type.

Inheritors

NeighborhoodPresent

BiomolPresentInNeighbor

JunctionPresentInCell

Properties

val node: Node<T>

Functions

abstract fun cloneCondition(newNode: Node<T>, newReaction: Reaction<T>): AbstractNeighborCondition<T>

fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

open fun getPropensityContribution(): Double

Override if the desired behavior differs.

getValidNeighbors

fun getValidNeighbors(): Map<Node<T>, Double>

Searches in the given neighborhood which nodes satisfy the condition and returns a list of valid neighbors.

abstract fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String