alchemist-incarnation-biochemistry/it.unibo.alchemist.model.biochemistry.properties/CircularCell

CircularCell

class CircularCell @JvmOverloads constructor(environment: Environment<Double, Euclidean2DPosition>, val node: Node<Double>, val diameter: Double = 0.0, val junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>> = ObservableMutableMap()) : AbstractCapability<Double> , CircularCellProperty, CellProperty<Euclidean2DPosition> (source)

Base implementation of a CircularCellProperty.

Constructors

constructor(environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, diameter: Double = 0.0, junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>> = ObservableMutableMap())

Properties

open override val diameter: Double

The diameter of the cell.

open override val junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>>

The map junction - node - quantity.

open override val junctionsCount: Int

The total number of junctions in this node.

open override val node: Node<Double>

polarizationVersor

open override var polarizationVersor: Euclidean2DPosition

The polarization versor, e.g. a versor indicating the direction in which the cell will move the next time.

open val radius: Double

The radius of the cell.

Functions

open override fun addJunction(junction: Junction, neighbor: Node<Double>)

Add a junction to the current node. junction the junction. neighbor the neighbor node at the other side of the junction.

addPolarizationVersor

open override fun addPolarizationVersor(versor: Euclidean2DPosition)

Add versor to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

open override fun cloneOnNewNode(node: Node<Double>): Capability<Double>

containsJunction

open override fun containsJunction(junction: Junction): Boolean

Return true if a junction is present in the current node, false otherwise. Note: a junction is considered present if the method junction.equals(j) return true.

getAllNodesLinkWithJunction

open override fun getAllNodesLinkWithJunction(): Set<Node<Double>>

Returns set of Nodes which are linked by a junction with the current node.

getNeighborLinkWithJunction

open override fun getNeighborLinkWithJunction(junction: Junction): Set<Node<Double>>

Returns a set of Nodes which are linked with the current node by a junction of the type junction.

observeContainsJunction

open override fun observeContainsJunction(junction: Junction): Observable<Boolean>

Return an observable view of the presence of the junction in the current node.

observeNeighborLinkWithJunction

open override fun observeNeighborLinkWithJunction(junction: Junction): Observable<Set<Node<Double>>>

Returns an observable view of the set of Nodes which are linked with the current node by a junction.

open override fun removeJunction(junction: Junction, neighbor: Node<Double>)

Removes a junction from this node.

open override fun toString(): String