alchemist/it.unibo.alchemist.model.biochemistry.conditions/BiomolPresentInNeighbor

BiomolPresentInNeighbor

class BiomolPresentInNeighbor(environment: Environment<Double, *>, reaction: NodeReaction<Double>, molecule: Biomolecule, concentration: Double) : AbstractNeighborCondition<Double>

This condition is valid if a selected biomolecule is present in the neighborhood of the node.

Parameters

molecule

the molecule to check

concentration

the minimum concentration

reaction

the reaction owning this condition

environment

the environment

Constructors

BiomolPresentInNeighbor

constructor(environment: Environment<Double, *>, reaction: NodeReaction<Double>, molecule: Biomolecule, concentration: Double)

Properties

override val isValid: Observable<Boolean>

The live validity of this condition.

override val reaction: NodeReaction<Double>

The NodeReaction owning this condition, hosted by targetNode.

val targetNode: Node<Double>

Functions

beforeReactionFires

open fun beforeReactionFires()

Signals that the owning reaction is about to fire. Used to implement conditions latched to changes that occur in-between reaction executions.

override fun cloneCondition(newReaction: Reaction<Double>): Condition<Double>

Creates an equivalent condition owned by newReaction, such as a reaction cloned onto a new node. A condition targeting the host of its reaction targets the host of newReaction, which must then be a Node; a condition targeting any other node keeps its target.

open override fun dispose()

Disposes and releases the resources held by this object.

getValidNeighbors

fun getValidNeighbors(): Map<Node<Double>, Double>

Current eligible neighbors and their selection weights.

observeValidNeighbors

fun observeValidNeighbors(): Observable<Map<Node<Double>, Double>>

Observable eligible neighbors and their selection weights.

infix fun Condition<*>.shouldEqual(other: Condition<*>)

open override fun toString(): String