alchemist/it.unibo.alchemist.model.conditions/ContainsMolecule

ContainsMolecule

class ContainsMolecule<T>(node: Node<T>, molecule: Molecule) : AbstractNonPropensityContributingCondition<T>

The condition is valid if the node contains the molecule.

Constructors

ContainsMolecule

constructor(node: Node<T>, molecule: Molecule)

Properties

node

val node: Node<T>

Functions

cloneCondition

open override fun cloneCondition(node: Node<T>, reaction: Reaction<T>): Condition<T>

This method allows to clone this action on a new node. It may result useful to support runtime creation of nodes with the same reaction programming, e.g. for morphogenesis.

getContext

open override fun getContext(): Context

getInboundDependencies

override fun getInboundDependencies(): ListSet

getPropensityContribution

override fun getPropensityContribution(): Double

This method is a support for the propensity calculation inside the Reactions. It allows this condition to influence the rate calculation in some way. It's up to the reaction to decide whether to use or not this information, and how.

isValid

open override fun isValid(): Boolean

reactionReady

open fun reactionReady()

This method is called by the Simulation once the Reaction whose this Condition belongs to is the next one to be executed, and all its conditions passed (namely, the next operation will be the reaction execution). It can be used to perform sanity checks, as well as for registering the status of the simulated world for future comparisons. Defaults to an empty implementation.

toString

open override fun toString(): String