alchemist/it.unibo.alchemist.model.biochemistry.conditions/NeighborhoodPresent

NeighborhoodPresent

class NeighborhoodPresent<T> : AbstractNeighborCondition<T>

A condition is valid if the node has a neighborhood, formally if the node has at least one node connected by a linking rule.

Parameters

<T>

The concentration type.

Constructors

NeighborhoodPresent

constructor(environment: Environment<T, out Any>, node: Node<T>)

Create the condition.

Properties

val node: Node<T>

Functions

open fun cloneCondition(node: Node<T>, r: Reaction<T>): NeighborhoodPresent<T>

open fun cloneCondition(p: Node<T>, p1: Reaction<T>): Condition<T>

abstract fun getContext(): Context

fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

abstract fun getPropensityContribution(): Double

open fun getPropensityContribution(): Double

Override if desired behavior differs.

getValidNeighbors

fun getValidNeighbors(): Map<Node<T>, Double>

Searches in the given neighborhood which nodes satisfy the condition, and returns a list of valid neighbors.

open fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String