alchemist/it.unibo.alchemist.model.biochemistry.conditions/AbstractNeighborCondition

AbstractNeighborCondition

abstract class AbstractNeighborCondition<T> : AbstractCondition<T>

Represents a condition on a neighbor. Formally this conditions is satisfied if at least one neighbor satisfy the condition.

Parameters

<T>

the concentration type.

Inheritors

BiomolPresentInNeighbor

JunctionPresentInCell

NeighborhoodPresent

Properties

val node: Node<T>

Functions

abstract fun cloneCondition(node: Node<T>, reaction: Reaction<T>): AbstractNeighborCondition<T>

fun getContext(): Context

getInboundDependencies

fun getInboundDependencies(): ListSet<out Dependency>

getPropensityContribution

open fun getPropensityContribution(): Double

Override if desired behavior differs.

getValidNeighbors

fun getValidNeighbors(): Map<Node<T>, Double>

Searches in the given neighborhood which nodes satisfy the condition, and returns a list of valid neighbors.

abstract fun isValid(): Boolean

open fun reactionReady()

open fun toString(): String