alchemist/it.unibo.alchemist.model.biochemistry.properties/Cell

Cell

class Cell @JvmOverloads constructor(val environment: Environment<Double, Euclidean2DPosition>, val node: Node<Double>, val junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>> = LinkedHashMap()) : AbstractNodeProperty<Double> , CellProperty<Euclidean2DPosition>

Base implementation of a CellProperty.

Constructors

constructor(environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>> = LinkedHashMap())

Properties

val environment: Environment<Double, Euclidean2DPosition>

The environment in which node is moving.

open override val junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>>

The map junction - node - quantity.

open val junctionsCount: Int

The total number of junctions presents in this node.

open override val node: Node<Double>

polarizationVersor

open override var polarizationVersor: Euclidean2DPosition

The polarization versor, e.g. a versor indicating the direction in which the cell will move the next time.

Functions

open fun addJunction(junction: Junction, neighbor: Node<Double>)

Add a junction to the current node. junction the junction. neighbor the neighbor node at the other side of the junction.

addPolarizationVersor

open override fun addPolarizationVersor(versor: Euclidean2DPosition)

add versor to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

open override fun cloneOnNewNode(node: Node<Double>): Cell

containsJunction

open fun containsJunction(junction: Junction): Boolean

Return true if a junction is present in the current node, false otherwise. Note: a junction is considered present if the method junction.equals(j) return true. junction the junction.

getAllNodesLinkWithJunction

open fun getAllNodesLinkWithJunction(): Set<Node<Double>>

Returns set of Nodes which are linked by a junction with the current node.

getNeighborLinkWithJunction

open fun getNeighborLinkWithJunction(junction: Junction): Set<Node<Double>>

Returns a set of Nodes which are linked with the current node by a junction of the type junction.

open fun removeJunction(junction: Junction, neighbor: Node<Double>)

Removes a junction from this node.

open override fun toString(): String