alchemist/it.unibo.alchemist.model.biochemistry/CellProperty

CellProperty

interface CellProperty<P : Vector<P>> : NodeProperty<Double>

A node's capability to behave as a cell.

Inheritors

CircularCellProperty

Properties

abstract val junctions: MutableMap<Junction, MutableMap<Node<Double>, Int>>

The map junction - node - quantity.

open val junctionsCount: Int

The total number of junctions presents in this node.

abstract val node: Node<Double>

polarizationVersor

abstract var polarizationVersor: P

The polarization versor, e.g. a versor indicating the direction in which the cell will move the next time.

Functions

open fun addJunction(junction: Junction, neighbor: Node<Double>)

Add a junction to the current node. junction the junction. neighbor the neighbor node at the other side of the junction.

addPolarizationVersor

abstract fun addPolarizationVersor(versor: P)

add versor to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

abstract fun cloneOnNewNode(node: Node<Double>): NodeProperty<Double>

containsJunction

open fun containsJunction(junction: Junction): Boolean

Return true if a junction is present in the current node, false otherwise. Note: a junction is considered present if the method junction.equals(j) return true. junction the junction.

getAllNodesLinkWithJunction

open fun getAllNodesLinkWithJunction(): Set<Node<Double>>

Returns set of Nodes which are linked by a junction with the current node.

getNeighborLinkWithJunction

open fun getNeighborLinkWithJunction(junction: Junction): Set<Node<Double>>

Returns a set of Nodes which are linked with the current node by a junction of the type junction.

open fun removeJunction(junction: Junction, neighbor: Node<Double>)

Removes a junction from this node.