alchemist/it.unibo.alchemist.model.biochemistry.reactions/BiochemicalReaction

BiochemicalReaction

class BiochemicalReaction : ChemicalReaction<T>

A biochemical Reaction.

Constructors

constructor(node: Node<Double>, timeDistribution: TimeDistribution<Double>, environment: Environment<Double, out Any>, randomGenerator: RandomGenerator)

Properties

node

val node: Node<T>

timeDistribution

val timeDistribution: TimeDistribution<T>

Functions

canExecute

open fun canExecute(): Boolean

cloneOnNewNode

abstract fun cloneOnNewNode(p: Node<T>, p1: Time): Reaction<T>

@Nonnull

open fun cloneOnNewNode(@Nonnull node: Node<Double>, @Nonnull currentTime: Time): BiochemicalReaction

compareTo

fun compareTo(o: Actionable<T>): Int

equals

fun equals(o: Any): Boolean

execute

open fun execute()

getActions

open fun getActions(): List<Action<T>>

getConditions

open fun getConditions(): List<Condition<T>>

getInboundDependencies

abstract fun getInboundDependencies(): ListSet<out Dependency>

fun getInboundDependencies(): ListSet<Dependency>

getInputContext

fun getInputContext(): Context

getOutboundDependencies

abstract fun getOutboundDependencies(): ListSet<out Dependency>

fun getOutboundDependencies(): ListSet<Dependency>

getOutputContext

fun getOutputContext(): Context

getRate

fun getRate(): Double

getTau

fun getTau(): Time

hashCode

fun hashCode(): Int

initializationComplete

fun initializationComplete(atTime: Time, environment: Environment<T, out Any>)

setActions

open fun setActions(actions: List<out Action<T>>)

setConditions

open fun setConditions(@Nonnull conditions: List<out Condition<Double>>)

toGraphQLReactionSurrogate

fun <T> Reaction<T>.toGraphQLReactionSurrogate(): ReactionSurrogate<T>

Converts a Reaction to a ReactionSurrogate.

toString

open fun toString(): String

update

fun update(currentTime: Time, hasBeenExecuted: Boolean, environment: Environment<T, out Any>)