alchemist/it.unibo.alchemist.model.biochemistry/BiochemistryIncarnation

BiochemistryIncarnation

class BiochemistryIncarnation : Incarnation<T, P>

Factory for the biochemistry incarnation entities.

Constructors

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constructor()

Functions

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open fun createAction(randomGenerator: RandomGenerator, environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, time: TimeDistribution<Double>, actionable: Actionable<Double>, additionalParameters: Any): Action<Double>
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open fun createConcentration(): Double
open fun createConcentration(descriptor: Any): Double
Creates a new concentration object of a specific concrete type.
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open fun createCondition(randomGenerator: RandomGenerator, environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, time: TimeDistribution<Double>, actionable: Actionable<Double>, additionalParameters: Any): Condition<Double>
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open fun createMolecule(s: String): Biomolecule
Parses a String, and provides a Molecule.
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open fun createNode(randomGenerator: RandomGenerator, environment: Environment<Double, Euclidean2DPosition>, parameter: Any): Node<Double>
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open fun createReaction(randomGenerator: RandomGenerator, environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, timeDistribution: TimeDistribution<Double>, parameter: Any): Reaction<Double>
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open fun createTimeDistribution(randomGenerator: RandomGenerator, environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, parameter: Any): TimeDistribution<Double>
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open fun getProperty(node: Node<Double>, molecule: Molecule, property: String): Double
Given a Node, a Molecule and a property expressed as a String, returns a numeric value.
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open fun toString(): String