alchemist/it.unibo.alchemist.model.biochemistry.properties/Cell

Cell

class Cell @JvmOverloads constructor(val environment: Environment<Double, Euclidean2DPosition>, val node: Node<Double>, val junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>> = ObservableMutableMap()) : AbstractCapability<Double> , CellProperty<Euclidean2DPosition>

Base implementation of a CellProperty.

Constructors

constructor(environment: Environment<Double, Euclidean2DPosition>, node: Node<Double>, junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>> = ObservableMutableMap())

Properties

val environment: Environment<Double, Euclidean2DPosition>

The environment in which node is moving.

open override val junctions: ObservableMutableMap<Junction, ObservableMutableMap<Node<Double>, Int>>

The map junction - node - quantity.

open val junctionsCount: Int

The total number of junctions in this node.

open override val node: Node<Double>

The node to which the capability is added.

polarizationVersor

open override var polarizationVersor: Euclidean2DPosition

The polarization versor, e.g. a versor indicating the direction in which the cell will move the next time.

Functions

open fun addJunction(junction: Junction, neighbor: Node<Double>)

Add a junction to the current node. junction the junction. neighbor the neighbor node at the other side of the junction.

addPolarizationVersor

open override fun addPolarizationVersor(versor: Euclidean2DPosition)

Add versor to the polarization versor inside the cell; useful for considering the combination of various stimuli in a cell.

open override fun cloneOnNewNode(node: Node<Double>): Cell

Clones this property to be added on a new node.

containsJunction

open fun containsJunction(junction: Junction): Boolean

Return true if a junction is present in the current node, false otherwise. Note: a junction is considered present if the method junction.equals(j) return true.

getAllNodesLinkWithJunction

open fun getAllNodesLinkWithJunction(): Set<Node<Double>>

Returns set of Nodes which are linked by a junction with the current node.

getNeighborLinkWithJunction

open fun getNeighborLinkWithJunction(junction: Junction): Set<Node<Double>>

Returns a set of Nodes which are linked with the current node by a junction of the type junction.

observeContainsJunction

open fun observeContainsJunction(junction: Junction): Observable<Boolean>

Return an observable view of the presence of the junction in the current node.

observeNeighborLinkWithJunction

open fun observeNeighborLinkWithJunction(junction: Junction): Observable<Set<Node<Double>>>

Returns an observable view of the set of Nodes which are linked with the current node by a junction.

open fun removeJunction(junction: Junction, neighbor: Node<Double>)

Removes a junction from this node.

infix fun Capability<*>.shouldEqual(other: Capability<*>)

open override fun toString(): String