alchemist/it.unibo.alchemist.model.biochemistry.actions

Package-level declarations

Types

AbstractNeighborAction

abstract class AbstractNeighborAction<T> : AbstractRandomizableAction<T>

Represents an action on a neighbor.

AbstractRandomizableAction

abstract class AbstractRandomizableAction<T> : AbstractAction<T>

AddJunctionInCell

class AddJunctionInCell : AbstractNeighborAction<T>

Represent the action of add a junction between the current node and a neighbor.

AddJunctionInNeighbor

class AddJunctionInNeighbor<P : Position<out P>?> : AbstractNeighborAction<T>

Represent the action of add a junction between a neighbor and the current node.

class CellMove : AbstractMoveNode<T, P>

An action moving cells (Nodes with a CellProperty) in the environment.

CellTensionPolarization

class CellTensionPolarization : AbstractAction<T>

Models the tension polarization of CircularDeformableCell in an EnvironmentSupportingDeformableCells.

ChangeBiomolConcentrationInCell

class ChangeBiomolConcentrationInCell : AbstractActionOnSingleMolecule<T>

ChangeBiomolConcentrationInEnv

class ChangeBiomolConcentrationInEnv : AbstractRandomizableAction<T>

Action implementing the changing of the concentration of a given biomolecule in environment.

ChangeBiomolConcentrationInNeighbor

class ChangeBiomolConcentrationInNeighbor(randomGenerator: RandomGenerator, environment: Environment<Double, *>, node: Node<Double>, val molecule: Biomolecule, val deltaConcentration: Double) : AbstractNeighborAction<Double>

Changes the concentration of a Biomolecule (molecule) in a randomly-selected compatible neighbor cell by deltaConcentration.

ChemotacticPolarization

class ChemotacticPolarization : AbstractAction<T>

Models the chemotactic polarization of a Cell.

RandomPolarization

class RandomPolarization : AbstractRandomizableAction<T>

Polarizes a CellProperty in a random direction.

RemoveJunctionInCell

class RemoveJunctionInCell : AbstractNeighborAction<T>

Represent the action of removing a junction between the current node and a neighbor.

RemoveJunctionInNeighbor

class RemoveJunctionInNeighbor : AbstractNeighborAction<T>

Represent the action of removing a junction between a neighbor and the current node.